Single-Residue Protection Factor: A simple weblet

This converts footprinting rates to structure-based protection factors

Select Residue Name:

rate constant

protection factor










Note 1: all PF values are at a relative scale, using Proline as a reference state.

Note 2: Cross-residue comparison is valid if experimental conditions are identical.

Reference:

If this simple converter is used in your publication, please cite:

1. Wei Huang, KM Ravikumar, M Chance, and Sichun Yang Quantitative mapping of protein structure by hydroxyl radical footprinting mediated structural mass spectrometry: A protection factor analysis, Biophys. J., 108 107–115 (2015). [PDF] [DOI]

2. P. Kaur, J. Kiselar, S. Yang, and M. Chance Quantitative protein topography analysis and high-resolution structure prediction using hydroxyl radical labeling and tandem-ion mass spectrometry, Mol Cell Proteomics, 14 1159–1168 (2015). [PDF] [DOI]